PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011456
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 228aa    MW: 24235.5 Da    PI: 8.3253
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011456genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.91.5e-091042941
                 HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
       SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifs 41
                  +++f+kRr+g++ K + ++ LCda+va    s
  Lus10011456 10 LSTSFTKRRQGLFSKVSQVCLLCDANVAAFASS 42
                 58*************************976555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-4157IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.722146IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-10571IPR002100Transcription factor, MADS-box
PfamPF003192.6E-9646IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MELRQSPSSL STSFTKRRQG LFSKVSQVCL LCDANVAAFA SSPAKKSPPK FFSLGHPSVD  60
SVLNDLTGRN PVPKLGDLIS KRTAQHVLRL ANPPVRKSAA GLNGLSNAIE EMVNGGGDLK  120
VLVELLRKMK STAEAKSGGR KQIIPQIGSS DLVAVGGSGG GDNDSVKLMS SGNEEQETNW  180
MEVEDNYDIG SSSTNISLFS TVVPSWSCLR DAPIWSRFEG YSEGMLC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14582714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.12e-10M-type_MADS family protein